PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G06900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 288aa    MW: 32602.7 Da    PI: 9.1827
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G06900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.1e-3151101151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyeys+
  OGLUM05G06900.1  51 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 101
                      79***********************************************95 PP

2K-box105.28.1e-351192154100
            K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                      s+ + ++e +a+++qqe+akLk++i nLq+++R l+G+++++++++eL+qLe +L+k+l kiR++Knell+++ie++q++e elq++n++L++k
  OGLUM05G06900.1 119 SNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSK 212
                      34444999************************************************************************************** PP

            K-box  98 lee 100
                      ++e
  OGLUM05G06900.1 213 VAE 215
                      986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.42243103IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-3943102IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004599IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-3345116IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-324565IPR002100Transcription factor, MADS-box
CDDcd002652.24E-4445117No hitNo description
PfamPF003191.3E-265299IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-326580IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-3280101IPR002100Transcription factor, MADS-box
PfamPF014862.1E-26128213IPR002487Transcription factor, K-box
PROSITE profilePS5129714.732129219IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MHIYKEQEAE PSTGLMMPEP APVASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ  60
VTFCKRRNGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS NNSVKETIER YKKANSDTSN  120
ASTVAEINAQ HYQQEAAKLK QQITNLQNSN RTLVGDNITT MNHRELKQLE GRLDKGLGKI  180
RARKNELLCA EIEYMQRRET ELQNDNMYLK SKVAESERGL QTVNMMGSAS TSEYVQNMIH  240
YDPRNFLQFN IMHQPQYYPE QEDRKAFMSG KKYSQCNIVR VHSSTNEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-1945115272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B2e-1945115272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C2e-1945115272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D2e-1945115272MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A4e-1945115272Myocyte-specific enhancer factor 2A
3kov_B4e-1945115272Myocyte-specific enhancer factor 2A
3kov_I4e-1945115272Myocyte-specific enhancer factor 2A
3kov_J4e-1945115272Myocyte-specific enhancer factor 2A
3p57_A4e-1945115272Myocyte-specific enhancer factor 2A
3p57_B4e-1945115272Myocyte-specific enhancer factor 2A
3p57_C4e-1945115272Myocyte-specific enhancer factor 2A
3p57_D4e-1945115272Myocyte-specific enhancer factor 2A
3p57_I4e-1945115272Myocyte-specific enhancer factor 2A
3p57_J4e-1945115272Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2321570.0AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds.
GenBankFJ7509420.0FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638060.10.0PREDICTED: MADS-box transcription factor 58
SwissprotQ2V0P10.0MAD58_ORYSJ; MADS-box transcription factor 58
TrEMBLA0A0D9ZVI20.0A0A0D9ZVI2_9ORYZ; Uncharacterized protein
STRINGLOC_Os05g11414.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.18e-95MIKC_MADS family protein